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 Molecular Diagnostics-Bacterial Infections

No

TEST NAME

SPECIMEN TYPE

TURNAROUND TIME (TAT)

Emergency (STAT) case

Performed day

DNA/RNA

1

Acinetobacter baumannii

Whole blood , CSF ، Respiratory sample ، Urine , Blood Culture

3 Days

Daily

Daily

DNA

2

Acinetobacter species

Whole blood , CSF ، Respiratory sample ، Urine , Blood Culture

3 Days

Daily

Daily

DNA

3

Bordetella parapertussis

Nasopharyngeal aspirates or swabs & other Respiratory Samples

2 Days

Daily

Daily

DNA

4

Bordetella pertussis

Nasopharyngeal aspirates or swabs & other Respiratory Samples

2 Days

Daily

Daily

DNA

5

Bordetella species

Nasopharyngeal aspirates or swabs & other Respiratory Samples

2 Days

Daily

Daily

DNA

6

Brucella abortus

Whole blood ، Bone marrow , CSF ، Synovial Fluid ، Urine , Blood Culture

3 Days

Daily

Daily

DNA

7

Brucella melitensis

Whole blood ، Bone marrow , CSF ، Synovial Fluid ، Urine , Blood Culture

3 Days

Daily

Daily

DNA

8

Brucella species

Whole blood ، Bone marrow , CSF ، Synovial Fluid ، Urine , Blood Culture

3 Days

Daily

Daily

DNA

9

Chlamydia pneumoniae

Respiratory samples

3 Days

Daily

Daily

DNA

10

Chlamydia trachomatis

Genitourinary Samples , Urine , Conjunctiva , Skin Lesions ,
Inguinal lymph node aspirate

3 Days

Daily

Daily

DNA

11

Clostridium difficile

Stool

Daily

Daily

Daily

RNA

12

Hemophilus influenza (H.influ)

Respiratory samples , CSF , Whole blood

3 Days

Daily

Daily

DNA

13

Legionella pneumophila

Blood , Respiratory Samples

3 Days

Daily

Daily

DNA

14

Listeria monocytogenes

CSF , Mucous membrane scrapes (Washes) , Stool , Milk, Whole blood , Amniotic fluid

3 Days

Daily

Daily

DNA

15

Methicillin-resistant Staphylococcus aureus
(MRSA)

Wound & soft tissue samples, CSF, Whole blood , other body fluids

5 Days

Daily

Daily

DNA

16

Mycobacterium tuberculosis (BK)

CSF, Respiratory Samples, Synovial Fluid, Pleural fluid, Paraffin embedded tissue block , Body fluid

3 Days

NA

Daily

DNA

17

Mycoplasma genitalium

Genitourinary Samples , Urine

3 Days

NA

Sunday/Tuesday/Thursday

DNA

18

Mycoplasma pneumoniae

Respiratory samples

3 Days

Daily

Daily

DNA

19

Neisseria gonorrhoeae

Genitourinary Samples , Throat Swabs,  Conjunctiva , Synovial Fluid ,Urine

3 Days

NA

Sunday/Tuesday/Thursday

DNA

20

Neisseria meningitidis

CSF , Throat swab , Whole blood

3 Days

Daily

Daily

DNA

21

Staphylococus aureus

Wound & soft tissue samples , CSF, Whole blood ,
Respiratory samples, body fluids

3 Days

Daily

Daily

DNA

22

Streptococcus pneumoniae

Respiratory samples , CSF , Whole blood , Urine

3 Days

Daily

Daily

DNA

23

Treponema pallidum

Genitourinary Samples

3 Days

Daily

Daily

DNA

24

Ureaplasma parvum

Genitourinary Samples , Urine

3 Days

Daily

Daily

DNA

25

Ureaplasma urealyticum

Genitourinary Samples , Urine

3 Days

Daily

Daily

DNA

 

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